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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_7485254_7486234_R

Intron Information:

Intron Rank:
39
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
7485254 - 7486234
Intron Length:
981

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATAGTTG
5'SS Class:
major
3'SS Sequence:
TCTGTCTTTTAAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTACAT
U12 Branch Point Sequence:
TTTACATTCAGT
Flanking Amino Acid:
SQSARPANRTALSDPSSRLS
Intron Amino Acid Position:
2735

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.9
0.54
1
65.5
40.9
Major BPS
82.7
0.81
0.9
89.3
26.1
Major PPT
75.3
0.57
1
79.1
33.3
Minor 5ss
45.8
-0.4
3.2
63.6
48.1
Minor BPS
49
0.01
2.3
77.89
44.1

Associated Gene:

Gene:
HERC1
Ensembl Gene ID:
ENSAPLG00000002872
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002992
7452172 - 7537130
84959