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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_7486396_7487375_R

Intron Information:

Intron Rank:
38
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
7486396 - 7487375
Intron Length:
980

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAATATC
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTATTATAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTCATATAAAT
Flanking Amino Acid:
SPGVMPLSLLRQMFSSYPTT
Intron Amino Acid Position:
2681

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.1
0.92
0.8
87.7
26.2
Major BPS
100
1.24
0.5
100
0
Major PPT
89
0.88
0.7
85.3
27.8
Minor 5ss
39.6
-1.2
2.9
54
43.3
Minor BPS
51.1
0.11
1.9
77.16
38.4

Associated Gene:

Gene:
HERC1
Ensembl Gene ID:
ENSAPLG00000002872
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002992
7452172 - 7537130
84959