Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_7489434_7491484_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

7489434 - 7491484

Intron Length:

2051

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTATAGTAT

5'SS Class:

major

3'SS Sequence:

ATCTTTATTAAAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTCTGAT

U12 Branch Point Sequence:

TCTTTATTAAAG

Flanking Amino Acid:

VQWDEAEITISFPTFWSPSD

Intron Amino Acid Position:

2356

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

74.2

0.57

70.7

35.5

Major BPS

91.3

1.03

0.7

79.6

35.6

Major PPT

71.5

0.48

1.1

71.8

36.6

Minor 5ss

43.8

-0.7

3.3

63.6

48.1

Minor BPS

58.4

0.12

1.8

65.38

42.2

Associated Gene:

Gene:

HERC1

Ensembl Gene ID:

ENSAPLG00000002872

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000002992

7452172 - 7537130

84959