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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_7492006_7492544_R

Intron Information:

Intron Rank:
35
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7492006 - 7492544
Intron Length:
539

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATATAA
5'SS Class:
strong_major
3'SS Sequence:
TTTGAACACTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTAAA
U12 Branch Point Sequence:
ATAACTTTAAAC
Flanking Amino Acid:
MFYSSNPGEKVKICDMQMRG
Intron Amino Acid Position:
2183

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.9
0.75
1
75.8
29
Major BPS
78
0.7
0.9
79.6
29.1
Major PPT
63.2
0.3
1
60.3
40.6
Minor 5ss
37.3
-1.4
3
47.4
47.9
Minor BPS
63.1
0.39
1.4
68.06
36.7

Associated Gene:

Gene:
HERC1
Ensembl Gene ID:
ENSAPLG00000002872
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002992
7452172 - 7537130
84959