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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_7492629_7492813_R

Intron Information:

Intron Rank:
34
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7492629 - 7492813
Intron Length:
185

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATTTAAC
5'SS Class:
major
3'SS Sequence:
TTGTTTTATCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTTTAT
U12 Branch Point Sequence:
TTTGTTTTATCT
Flanking Amino Acid:
RTISFGKNGEEPKLAFEDVD
Intron Amino Acid Position:
2155

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79
0.68
1
76
33.1
Major BPS
78.7
0.71
1.2
71.7
44.6
Major PPT
79.8
0.67
0.9
74.3
40.6
Minor 5ss
42.2
-0.9
2.5
54
43.3
Minor BPS
64
0.52
1.7
82.72
39.3

Associated Gene:

Gene:
HERC1
Ensembl Gene ID:
ENSAPLG00000002872
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002992
7452172 - 7537130
84959