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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_7493054_7493944_R

Intron Information:

Intron Rank:
33
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7493054 - 7493944
Intron Length:
891

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGTTGC
5'SS Class:
strong_major
3'SS Sequence:
AATTGCCTTCTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TTCTTTTTAATT
Flanking Amino Acid:
GVTSGCYQWKFYIVKENRGN
Intron Amino Acid Position:
2075

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.1
0.83
1
73.2
39.3
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
69.8
0.45
0.9
59.7
41.9
Minor 5ss
39.2
-1.2
3.1
52.5
44.7
Minor BPS
78
0.96
1
86.64
33.8

Associated Gene:

Gene:
HERC1
Ensembl Gene ID:
ENSAPLG00000002872
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002992
7452172 - 7537130
84959