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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_7494122_7494202_R

Intron Information:

Intron Rank:
32
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7494122 - 7494202
Intron Length:
81

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATGATG
5'SS Class:
strong_major
3'SS Sequence:
CTATTTCTGATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTACAT
U12 Branch Point Sequence:
GTTACATTTACT
Flanking Amino Acid:
KEKEQEMKLQKQGESEDEDE
Intron Amino Acid Position:
2016

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.9
0.73
1
75.3
40.4
Major BPS
65
0.37
1.3
75
40
Major PPT
71.7
0.49
1
69
36.9
Minor 5ss
35.9
-1.6
3.2
48.4
47.4
Minor BPS
57.4
0.32
2
79.6
41.5

Associated Gene:

Gene:
HERC1
Ensembl Gene ID:
ENSAPLG00000002872
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002992
7452172 - 7537130
84959