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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_7494662_7494896_R

Intron Information:

Intron Rank:
30
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
7494662 - 7494896
Intron Length:
235

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGATCT
5'SS Class:
strong_major
3'SS Sequence:
GTTCTACCTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTAACAT
U12 Branch Point Sequence:
ATTAACATAACA
Flanking Amino Acid:
LNIASQKCCSGVPLVGNLRT
Intron Amino Acid Position:
1943

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.2
0.81
0.9
76.9
32.4
Major BPS
71
0.52
1.1
77.7
35.3
Major PPT
78.7
0.65
0.9
74.7
35.2
Minor 5ss
46.7
-0.3
2.8
66
45.1
Minor BPS
57.5
0.23
1.8
73.29
37.5

Associated Gene:

Gene:
HERC1
Ensembl Gene ID:
ENSAPLG00000002872
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002992
7452172 - 7537130
84959