About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_7499460_7499544_R

Intron Information:

Intron Rank:
26
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7499460 - 7499544
Intron Length:
85

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGTGTATT
5'SS Class:
strong_major
3'SS Sequence:
TTGTTTGACTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
ATTTGTTTGACT
Flanking Amino Acid:
GESVRLHHYQDGIRAAKRSI
Intron Amino Acid Position:
1707

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.6
0.89
0.8
88.7
25.2
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
74.4
0.55
1
73.6
40.9
Minor 5ss
42.3
-0.8
2.8
59.2
45.4
Minor BPS
67.3
0.63
1.8
85.05
35.5

Associated Gene:

Gene:
HERC1
Ensembl Gene ID:
ENSAPLG00000002872
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002992
7452172 - 7537130
84959