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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_7509914_7511264_R

Intron Information:

Intron Rank:
22
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
7509914 - 7511264
Intron Length:
1351

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGTGGTTC
5'SS Class:
major
3'SS Sequence:
ACATCTGAGGCAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTTTTTTCATT
Flanking Amino Acid:
TAPESIGLMTRSESLTAESR
Intron Amino Acid Position:
1486

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79
0.68
0.9
71.7
34.3
Major BPS
100
1.24
0.5
100
0
Major PPT
55.3
0.12
1.1
50.8
42.3
Minor 5ss
41.9
-0.9
3.2
57.8
47.2
Minor BPS
67.5
0.63
1.7
86.64
33.8

Associated Gene:

Gene:
HERC1
Ensembl Gene ID:
ENSAPLG00000002872
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002992
7452172 - 7537130
84959