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Intron Name: Anas_platyrhynchos_platyrhynchos_11_7516942_7517868_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

7516942 - 7517868

Intron Length:

927

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TGG|GTAAGCTGT

5'SS Class:

strong_major

3'SS Sequence:

TCCCTTCTGTTAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

GTTTAAT

U12 Branch Point Sequence:

AATTCCTTAAGT

Flanking Amino Acid:

DGVEMDIPHLDKCMSSLLEV

Intron Amino Acid Position:

1190

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.1

0.71

69.7

43.7

Major BPS

81.8

0.79

1.1

34.5

Major PPT

71.9

0.49

0.9

72.8

32.1

Minor 5ss

45.1

-0.5

2.9

56.3

47.9

Minor BPS

77.1

0.93

1.5

87.87

Associated Gene:

Gene:

HERC1

Ensembl Gene ID:

ENSAPLG00000002872

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000002992

7452172 - 7537130

84959