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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_7519882_7520040_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7519882 - 7520040
Intron Length:
159

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGTGCC
5'SS Class:
strong_major
3'SS Sequence:
TGTTTCCTTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATGAT
U12 Branch Point Sequence:
TGTTTGGTGATT
Flanking Amino Acid:
AFCHINSVSENSSSVALLHK
Intron Amino Acid Position:
1008

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87
0.87
0.9
75
33.4
Major BPS
84.6
0.86
1
74
41.2
Major PPT
83.8
0.76
0.7
82
30
Minor 5ss
40
-1.1
3
53.2
44.1
Minor BPS
44.9
-0.3
2.6
70.56
41.2

Associated Gene:

Gene:
HERC1
Ensembl Gene ID:
ENSAPLG00000002872
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002992
7452172 - 7537130
84959