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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_7520194_7521414_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7520194 - 7521414
Intron Length:
1221

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACT|GTATGTATA
5'SS Class:
major
3'SS Sequence:
TTTGGGTAAATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTTATTTTATTT
Flanking Amino Acid:
TLLRNLGFYTDQAFGELEKN
Intron Amino Acid Position:
957

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.7
0.46
1.1
73.1
37.5
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
60.1
0.23
1.1
55.3
43.9
Minor 5ss
48.3
-0.1
2.5
69.3
41.2
Minor BPS
61.8
0.45
1.6
79.69
37

Associated Gene:

Gene:
HERC1
Ensembl Gene ID:
ENSAPLG00000002872
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002992
7452172 - 7537130
84959