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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_7522877_7524152_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7522877 - 7524152
Intron Length:
1276

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTCAGTAAT
5'SS Class:
major
3'SS Sequence:
ACTTTAATTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTAAT
U12 Branch Point Sequence:
GTTACTTTAATT
Flanking Amino Acid:
DSSVPDEIQEVVIETLSVGA
Intron Amino Acid Position:
841

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.7
0.56
1.3
80.7
33.7
Major BPS
87.2
0.92
0.9
87.6
25.6
Major PPT
74.6
0.55
0.9
71.7
37.7
Minor 5ss
34.5
-1.8
2.7
43.6
37.4
Minor BPS
76
0.89
1.2
85.44
34.7

Associated Gene:

Gene:
HERC1
Ensembl Gene ID:
ENSAPLG00000002872
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002992
7452172 - 7537130
84959