About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_7527778_7527862_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
7527778 - 7527862
Intron Length:
85

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGATAA
5'SS Class:
strong_major
3'SS Sequence:
TTTTACTTTATAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
TGTTTTTTACTT
Flanking Amino Acid:
GDSHCLALSHDNEVYAWGNN
Intron Amino Acid Position:
683

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.3
0.81
0.9
75.7
29.2
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
85.8
0.8
0.7
80.9
30.8
Minor 5ss
37.4
-1.4
3
44.1
44.7
Minor BPS
64.2
0.52
1.5
79.54
37.3

Associated Gene:

Gene:
HERC1
Ensembl Gene ID:
ENSAPLG00000002872
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002992
7452172 - 7537130
84959