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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_7529037_7529958_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
7529037 - 7529958
Intron Length:
922

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAGGTAAA
5'SS Class:
strong_major
3'SS Sequence:
CTTCCTTTTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTGTAT
U12 Branch Point Sequence:
TACTTCCCATTT
Flanking Amino Acid:
TVWSFGGGDNGKLGHGDTNR
Intron Amino Acid Position:
592

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.1
0.71
1
75.9
35.2
Major BPS
71.5
0.53
1.4
71.7
44.6
Major PPT
84.4
0.77
0.7
80.4
24.8
Minor 5ss
33.8
-1.8
3
38.1
42.1
Minor BPS
43.7
-0.4
2
61.53
42.7

Associated Gene:

Gene:
HERC1
Ensembl Gene ID:
ENSAPLG00000002872
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002992
7452172 - 7537130
84959