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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_75322_75939_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
75322 - 75939
Intron Length:
618

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATTGACA
5'SS Class:
major
3'SS Sequence:
CAAATTTTTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAA
U12 Branch Point Sequence:
TTTTCCCCAACA
Flanking Amino Acid:
DFASQLIFAQNRGDLTAENV
Intron Amino Acid Position:
286

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.4
0.53
1.1
66.9
38
Major BPS
82
0.79
0.8
83.7
25.7
Major PPT
76.6
0.6
0.9
73.1
41.4
Minor 5ss
38.7
-1.3
3
49.8
46.1
Minor BPS
68.3
0.57
1.9
84.96
34.3

Associated Gene:

Gene:
CYP19A1
Ensembl Gene ID:
ENSAPLG00000007655
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007995
68677 - 93897
25221