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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_7597131_7598135_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
7597131 - 7598135
Intron Length:
1005

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTGAGTGAC
5'SS Class:
strong_major
3'SS Sequence:
ATATCTTTTACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
CTTGTTTTAAAT
Flanking Amino Acid:
KNIFGTPEFVAPEIVNYEPL
Intron Amino Acid Position:
190

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.5
0.98
0.7
80.9
25.7
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
82.8
0.74
0.9
76.7
36.6
Minor 5ss
27.5
-2.6
3
33.8
42.3
Minor BPS
62
0.45
1.5
75.95
41.3

Associated Gene:

Gene:
DAPK2
Ensembl Gene ID:
ENSAPLG00000002776
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020535
7587356 - 7631422
44067
ENSAPLT00000002832
7587356 - 7627137
39782