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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_76055_77804_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
76055 - 77804
Intron Length:
1750

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGT|GTAAGTATC
5'SS Class:
major
3'SS Sequence:
TATCCACTTTCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TATTTATCAATA
Flanking Amino Acid:
SWLCKKYEEAVKDLKGAMEI
Intron Amino Acid Position:
247

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.9
0.63
1.1
78.2
36.4
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
78.6
0.64
0.9
74.5
34.9
Minor 5ss
42.3
-0.9
2.8
55.7
41.6
Minor BPS
55.8
0.18
1.8
69.87
36.1

Associated Gene:

Gene:
CYP19A1
Ensembl Gene ID:
ENSAPLG00000007655
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007995
68677 - 93897
25221