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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_7625182_7626846_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
7625182 - 7626846
Intron Length:
1665

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTCAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
TTGTTAACACCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAC
U12 Branch Point Sequence:
TTTTTGTTAACA
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.9
0.78
1.2
83.2
30.8
Major BPS
84.6
0.86
0.8
83.9
22.3
Major PPT
68.7
0.42
1
61.4
43.6
Minor 5ss
30.5
-2.2
2.5
33.7
41.5
Minor BPS
72.4
0.7
2
86.69
32.1

Associated Gene:

Gene:
DAPK2
Ensembl Gene ID:
ENSAPLG00000002776
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002832
7587356 - 7627137
39782