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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_7638655_7641631_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
7638655 - 7641631
Intron Length:
2977

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTGAGTAAT
5'SS Class:
strong_major
3'SS Sequence:
TATAATCTTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTATAAT
U12 Branch Point Sequence:
TGTTGTATAATC
Flanking Amino Acid:
RYFTRTILDARKLTGIAFGD
Intron Amino Acid Position:
769

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94.5
1.05
0.7
92.2
16.5
Major BPS
70.1
0.5
1.3
72.3
40.4
Major PPT
77.2
0.61
0.9
69.5
41
Minor 5ss
32
-2.1
2.8
41.5
45.1
Minor BPS
51
0.01
2
67.68
38.3

Associated Gene:

Gene:
TBC1D2B
Ensembl Gene ID:
ENSAPLG00000002740
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002788
7638459 - 7662814
24356