About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_7645430_7646086_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
7645430 - 7646086
Intron Length:
657

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATTTAT
5'SS Class:
strong_major
3'SS Sequence:
TCTGTCCTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACACAT
U12 Branch Point Sequence:
TTTAGGATCACT
Flanking Amino Acid:
EQAFFKPYPVSEYDIYGFQT
Intron Amino Acid Position:
462

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.7
0.89
0.9
85.9
25.1
Major BPS
61.1
0.28
1
67
29.8
Major PPT
84.1
0.77
0.8
81.1
31
Minor 5ss
41.9
-0.9
2.9
58.4
46.2
Minor BPS
39.6
-0.7
2.8
69.33
47.1

Associated Gene:

Gene:
TBC1D2B
Ensembl Gene ID:
ENSAPLG00000002740
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002788
7638459 - 7662814
24356