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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_7646281_7647421_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7646281 - 7647421
Intron Length:
1141

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTCAGATTA
5'SS Class:
major
3'SS Sequence:
TTGTTTTCTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
GTGTTCTAAATA
Flanking Amino Acid:
EVREREWQAKYTSLEAKLCQ
Intron Amino Acid Position:
398

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.4
0.67
1.2
77.8
33.3
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
89
0.88
0.7
85
29.8
Minor 5ss
36.9
-1.5
3.1
47.9
47.6
Minor BPS
59.6
0.3
1.7
67.12
40

Associated Gene:

Gene:
TBC1D2B
Ensembl Gene ID:
ENSAPLG00000002740
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002788
7638459 - 7662814
24356