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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_7647533_7648869_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7647533 - 7648869
Intron Length:
1337

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGAGCA
5'SS Class:
strong_major
3'SS Sequence:
CTTTCATTAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
CTTTCATTAACA
Flanking Amino Acid:
KELQELDRLKDNLQGYKTQN
Intron Amino Acid Position:
361

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.4
0.72
1
71.6
31.9
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
78.2
0.64
0.9
73.8
34.5
Minor 5ss
32.4
-2
3.3
40
39.8
Minor BPS
77.1
0.85
1.5
84.69
35.1

Associated Gene:

Gene:
TBC1D2B
Ensembl Gene ID:
ENSAPLG00000002740
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002788
7638459 - 7662814
24356