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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_7652285_7652553_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
7652285 - 7652553
Intron Length:
269

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGAAATG
5'SS Class:
major
3'SS Sequence:
ACATTTTATGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TGTTAATTAAAT
Flanking Amino Acid:
KRKNFAEGSKGLTGSAFPFD
Intron Amino Acid Position:
154

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.2
0.55
1.1
68.8
42.1
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
71
0.47
0.9
66.7
38.9
Minor 5ss
35
-1.7
3.4
48
47.7
Minor BPS
59.5
0.38
1.9
81.06
39.4

Associated Gene:

Gene:
TBC1D2B
Ensembl Gene ID:
ENSAPLG00000002740
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002788
7638459 - 7662814
24356