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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_7652712_7656926_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
7652712 - 7656926
Intron Length:
4215

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTTGG
5'SS Class:
strong_major
3'SS Sequence:
GTGCTTTTCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GACAAAT
U12 Branch Point Sequence:
GTGCTTTTCACA
Flanking Amino Acid:
FSLKQWSTEIKNSMSSLRKG
Intron Amino Acid Position:
101

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.8
0.8
0.9
72.5
39.9
Major BPS
51.7
0.04
1.2
59.2
35.9
Major PPT
77.3
0.62
0.9
71.7
38.2
Minor 5ss
41.3
-1
2.8
49.6
41
Minor BPS
49.5
-0
1.7
60.6
39.7

Associated Gene:

Gene:
TBC1D2B
Ensembl Gene ID:
ENSAPLG00000002740
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002788
7638459 - 7662814
24356