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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_7657093_7662678_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
7657093 - 7662678
Intron Length:
5586

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAGGTTGA
5'SS Class:
major
3'SS Sequence:
TTTTTTGGAATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTCAC
U12 Branch Point Sequence:
TTTTTTGGAATA
Flanking Amino Acid:
SKGLVAKDNPDLSILSQNAS
Intron Amino Acid Position:
46

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.8
0.66
1
67.7
40.2
Major BPS
77.2
0.68
0.8
77.6
26.2
Major PPT
71.6
0.49
1
69.9
40.3
Minor 5ss
38.3
-1.3
3.1
46.2
44.4
Minor BPS
50.7
0.02
2.1
71.08
35.7

Associated Gene:

Gene:
TBC1D2B
Ensembl Gene ID:
ENSAPLG00000002740
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002788
7638459 - 7662814
24356