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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_7705809_7705931_R

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
7705809 - 7705931
Intron Length:
123

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTT|GTGAAGCTG
5'SS Class:
weak_major
3'SS Sequence:
TACTTGTTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAA
U12 Branch Point Sequence:
TTTTTTCTACTT
Flanking Amino Acid:
RHSVWFLGVPLLHGRYHEMA
Intron Amino Acid Position:
28

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
54.9
0.12
1.1
48.4
41.5
Major BPS
81.6
0.78
0.8
82
24.9
Major PPT
82
0.72
0.9
75.8
37.9
Minor 5ss
30.8
-2.2
3.5
43.8
45
Minor BPS
54.5
0.22
1.9
79.49
37.4

Associated Gene:

Gene:
CIB2
Ensembl Gene ID:
ENSAPLG00000030437
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024699
7694630 - 7706014
11385