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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_7730995_7732577_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7730995 - 7732577
Intron Length:
1583

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCT|GTGAGTATG
5'SS Class:
major
3'SS Sequence:
TTTCTTTGCCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CATTCAT
U12 Branch Point Sequence:
CATTCATTAGCT
Flanking Amino Acid:
KQVTRSFGSAVQTVTLIPGD
Intron Amino Acid Position:
78

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72
0.52
1.1
71.2
40.3
Major BPS
79.8
0.74
0.9
81.3
29.9
Major PPT
77.9
0.63
0.8
73
37.3
Minor 5ss
36.8
-1.5
2.9
52.3
44.3
Minor BPS
60.7
0.41
1.9
78.69
43

Associated Gene:

Gene:
IDH3A
Ensembl Gene ID:
ENSAPLG00000001906
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002085
7729800 - 7740781
10982