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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_7732662_7734036_F

Intron Information:

Intron Rank:
3
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
7732662 - 7734036
Intron Length:
1375

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTCTA
5'SS Class:
strong_major
3'SS Sequence:
AAAATGTGTTTAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TATTGAA
U12 Branch Point Sequence:
TGATATTGAAGT
Flanking Amino Acid:
AVMKIFDAAKAPIQWEERNV
Intron Amino Acid Position:
106

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.1
0.85
0.9
80.8
33.6
Major BPS
79.4
0.73
0.9
69.6
37.5
Major PPT
55.6
0.13
1.1
51.5
46.9
Minor 5ss
39.5
-1.2
3
50.5
40
Minor BPS
48.3
-0
1.9
67.66
42.6

Associated Gene:

Gene:
IDH3A
Ensembl Gene ID:
ENSAPLG00000001906
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002085
7729800 - 7740781
10982