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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_7736055_7736132_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7736055 - 7736132
Intron Length:
78

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTGAGTATT
5'SS Class:
strong_major
3'SS Sequence:
TACTTCTTTCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATAAA
U12 Branch Point Sequence:
TTAGCCTTAATA
Flanking Amino Acid:
EMYLDTVCLNMVQDPSQFDV
Intron Amino Acid Position:
286

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
89
24.3
Major BPS
70.8
0.52
1
70.6
31.6
Major PPT
80.8
0.69
0.8
73.6
36.7
Minor 5ss
38.7
-1.3
3
56
41.5
Minor BPS
76.9
0.84
1.3
80.12
36.1

Associated Gene:

Gene:
IDH3A
Ensembl Gene ID:
ENSAPLG00000001906
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002085
7729800 - 7740781
10982