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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_7736198_7738338_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
7736198 - 7738338
Intron Length:
2141

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGGAGA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTTCTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTGGAT
U12 Branch Point Sequence:
AACTTGTGGATT
Flanking Amino Acid:
VMPNLYGDILSDLCAGLIGG
Intron Amino Acid Position:
307

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.9
0.75
1
71.4
40.1
Major BPS
56.3
0.16
1.5
57.1
49.4
Major PPT
94
0.99
0.5
88.9
28.2
Minor 5ss
37.7
-1.4
3.1
48.6
47.2
Minor BPS
43.4
-0.4
2.1
57.73
39.5

Associated Gene:

Gene:
IDH3A
Ensembl Gene ID:
ENSAPLG00000001906
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002085
7729800 - 7740781
10982