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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_7738833_7740697_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7738833 - 7740697
Intron Length:
1865

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAACATGA
5'SS Class:
major
3'SS Sequence:
TTTCTTCCTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
GTTTTATTAATA
Flanking Amino Acid:
ACFDTIKDGKVLTKDLGGNA
Intron Amino Acid Position:
387

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77
0.64
1.1
68.7
39.1
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
90.7
0.92
0.6
89.3
19.6
Minor 5ss
42.8
-0.8
2.9
56.9
47.1
Minor BPS
68.4
0.57
1.5
76.99
33.5

Associated Gene:

Gene:
IDH3A
Ensembl Gene ID:
ENSAPLG00000001906
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002085
7729800 - 7740781
10982