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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_7744223_7744782_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7744223 - 7744782
Intron Length:
560

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTACGTTAG
5'SS Class:
major
3'SS Sequence:
TCTGATATTCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
TTTTCTTCATCT
Flanking Amino Acid:
KFLSMLLTLKSVLDPDTSDP
Intron Amino Acid Position:
565

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.7
0.61
1
68.8
38.8
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
71.8
0.49
0.9
62.9
42.7
Minor 5ss
40.2
-1.1
3
48.7
41.9
Minor BPS
66.8
0.61
1.8
88.14
37.2

Associated Gene:

Gene:
ACSBG1
Ensembl Gene ID:
ENSAPLG00000001656
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001895
7743430 - 7761138
17709