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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_7748462_7749512_R

Intron Information:

Intron Rank:
9
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
7748462 - 7749512
Intron Length:
1051

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAGCTGTC
5'SS Class:
major
3'SS Sequence:
AGTTTTGGACAAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
ACCTAAA
U12 Branch Point Sequence:
GTGACCTAAAGC
Flanking Amino Acid:
LLRVRSPSSLKLADYLVLAK
Intron Amino Acid Position:
354

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
63.3
0.31
1.2
66
39.8
Major BPS
63.9
0.35
1
63.9
30.3
Major PPT
50.9
0.02
1.2
50.1
46.8
Minor 5ss
43.1
-0.8
3.5
60.2
39.2
Minor BPS
48.7
-0.1
2
59.6
45.2

Associated Gene:

Gene:
ACSBG1
Ensembl Gene ID:
ENSAPLG00000001656
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025859
7743430 - 7759595
16166