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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_7748486_7749551_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
7748486 - 7749551
Intron Length:
1066

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTATT
5'SS Class:
strong_major
3'SS Sequence:
TTGTACTCAGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTGTAC
U12 Branch Point Sequence:
TGTTTTGTACTC
Flanking Amino Acid:
SLERNLNCSSSDLKQFWTRL
Intron Amino Acid Position:
368

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
100
1.18
0.6
100
0
Major BPS
61.6
0.29
1.4
63.4
44
Major PPT
72
0.49
1
67.5
38.7
Minor 5ss
41.7
-0.9
2.9
59.7
44.8
Minor BPS
46.4
-0.2
2.2
61.57
38.9

Associated Gene:

Gene:
ACSBG1
Ensembl Gene ID:
ENSAPLG00000001656
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001895
7743430 - 7761138
17709