About Basic Search Advanced Search Downloads
Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_7753030_7755754_R


Intron Information:

Intron Rank:
6

Intron Class:
major

Intron Phase:
0

Intron Coordinates:
7753030 - 7755754

Intron Length:
2725

Sequence Information:

Terminal Dinucleotides:
GT-AG

5'SS Sequence:
ACG|GTATGTGAA

5'SS Class:
major

3'SS Sequence:
TTACATGCTCTAG|A

3'SS Class:
major_PPT

U2 Branch Point Sequence:
GTTACAT

U12 Branch Point Sequence:
TTTTCTGTTACA

Flanking Amino Acid:
IPERCPNLYTMEEFLDLGDD

Intron Amino Acid Position:
199

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev

Major 5ss
78.9
0.68
1
70.6
35.2

Major BPS
65
0.37
1.3
75
40

Major PPT
67.6
0.4
1
58.9
42.5

Minor 5ss
38.6
-1.3
3.1
48.8
47.3

Minor BPS
57.4
0.23
2.3
78.96
37.6

Associated Gene:

Gene:
ACSBG1

Ensembl Gene ID:

Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length

7743430 - 7759595
16166

7743430 - 7761138
17709