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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_7758311_7758561_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7758311 - 7758561
Intron Length:
251

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGTACA
5'SS Class:
strong_major
3'SS Sequence:
TATTACTTTTTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACTTCAT
U12 Branch Point Sequence:
TATTGTATAACT
Flanking Amino Acid:
SRKAAKSFLKLGLERFHSVA
Intron Amino Acid Position:
102

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.2
0.88
0.9
80.7
33.8
Major BPS
78.6
0.71
1
79.6
32.9
Major PPT
80.5
0.69
0.8
78.2
35.6
Minor 5ss
34.6
-1.7
2.9
43
44
Minor BPS
59
0.36
2
82.03
39.3

Associated Gene:

Gene:
ACSBG1
Ensembl Gene ID:
ENSAPLG00000001656
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025859
7743430 - 7759595
16166
ENSAPLT00000001895
7743430 - 7761138
17709