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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_7758780_7759555_R

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
7758780 - 7759555
Intron Length:
776

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTGGTGTTC
5'SS Class:
weak_major
3'SS Sequence:
CTTTATTTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
AATGCTTTATTT
Flanking Amino Acid:
TPTVLGSKDFETLWTSFADG
Intron Amino Acid Position:
14

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
59.1
0.22
1.1
55.5
38.3
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
88.3
0.86
0.7
80.5
36.7
Minor 5ss
34.7
-1.7
3.6
46
44.8
Minor BPS
56.1
0.27
1.7
71.01
40.6

Associated Gene:

Gene:
ACSBG1
Ensembl Gene ID:
ENSAPLG00000001656
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025859
7743430 - 7759595
16166