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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_7761087_7761128_R

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
7761087 - 7761128
Intron Length:
42

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
AGA|GCAATCTTT
5'SS Class:
weak_major
3'SS Sequence:
GGCTTAGGTTTAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTATTAT
U12 Branch Point Sequence:
TTATTATTATTT
Flanking Amino Acid:
PWENLRTIFRFKL
Intron Amino Acid Position:
4

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
50.6
0.02
1.4
58.3
46.3
Major BPS
84.7
0.86
1
74.3
40.7
Major PPT
58.1
0.18
1.1
54.6
44.9
Minor 5ss
40.8
-1
4.2
61.1
44.6
Minor BPS
56.7
0.29
1.8
77.56
39

Associated Gene:

Gene:
ACSBG1
Ensembl Gene ID:
ENSAPLG00000001656
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001895
7743430 - 7761138
17709