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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_7787821_7787899_F

Intron Information:

Intron Rank:
6
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
7787821 - 7787899
Intron Length:
79

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGTTAA
5'SS Class:
strong_major
3'SS Sequence:
AAAAAAATTGTAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTAAAA
U12 Branch Point Sequence:
ATTTGTTTAAAA
Flanking Amino Acid:
DKGSLIIQFLVQFPEHHWLP
Intron Amino Acid Position:
312

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.2
0.92
0.8
82
26.1
Major BPS
73.1
0.58
1
79.6
29.1
Major PPT
51.7
0.04
1
42.1
41.8
Minor 5ss
39.7
-1.2
2.8
45.9
43.7
Minor BPS
62.4
0.39
1.8
74.83
36.6

Associated Gene:

Gene:
DNAJA4
Ensembl Gene ID:
ENSAPLG00000001467
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001647
7784004 - 7788118
4115