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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_7791031_7791622_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
7791031 - 7791622
Intron Length:
592

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATGAGG
5'SS Class:
major
3'SS Sequence:
ATTATTTTTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
ATTAACTTAAAT
Flanking Amino Acid:
FCPDDTHFVSSSSDKSVKVW
Intron Amino Acid Position:
250

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.2
0.67
1
66.2
44.9
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
85.7
0.8
0.8
77.5
41
Minor 5ss
31.7
-2.1
3.1
40.2
45.5
Minor BPS
65.5
0.56
1.6
82.22
38.1

Associated Gene:

Gene:
WDR61
Ensembl Gene ID:
ENSAPLG00000000756
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001018
7789502 - 7796842
7341