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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_77920_78636_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
77920 - 78636
Intron Length:
717

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTACTAACA
5'SS Class:
major
3'SS Sequence:
CATCTATTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TGTTTGTTAACA
Flanking Amino Acid:
NKLFLGIPLDESAIVLKIQN
Intron Amino Acid Position:
209

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
64.3
0.34
1.1
60.1
38.5
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
80.7
0.69
0.8
77.3
35.5
Minor 5ss
32.9
-2
3
38.8
40.9
Minor BPS
66.5
0.51
2
79.59
36.6

Associated Gene:

Gene:
CYP19A1
Ensembl Gene ID:
ENSAPLG00000007655
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007995
68677 - 93897
25221