About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_7792487_7793282_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
7792487 - 7793282
Intron Length:
796

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATGGTT
5'SS Class:
strong_major
3'SS Sequence:
CTTTGAATTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTGAAT
U12 Branch Point Sequence:
AAACTTTGAATT
Flanking Amino Acid:
ATGKLLHTLEGHAMPIRSLT
Intron Amino Acid Position:
188

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.8
0.75
1
78.8
35.1
Major BPS
74.6
0.61
1.4
84
34.5
Major PPT
78.6
0.64
0.9
74.6
39
Minor 5ss
35.2
-1.7
3.8
55.5
48.6
Minor BPS
50.2
0.08
1.3
62.59
35

Associated Gene:

Gene:
WDR61
Ensembl Gene ID:
ENSAPLG00000000756
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001018
7789502 - 7796842
7341