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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_7793377_7793574_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7793377 - 7793574
Intron Length:
198

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAT|GTAAGAACA
5'SS Class:
strong_major
3'SS Sequence:
TGTTTTATTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTTAT
U12 Branch Point Sequence:
CAGTTGTTAAAT
Flanking Amino Acid:
RGKFILSIAYSPDGKYLASG
Intron Amino Acid Position:
157

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.2
0.71
1
76.4
32.2
Major BPS
78.7
0.71
1.2
71.7
44.6
Major PPT
86.6
0.82
0.8
81
35.3
Minor 5ss
36.2
-1.6
3
46.6
41.5
Minor BPS
48.7
-0
2.2
65.53
45

Associated Gene:

Gene:
WDR61
Ensembl Gene ID:
ENSAPLG00000000756
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001018
7789502 - 7796842
7341