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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_7793724_7794816_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
7793724 - 7794816
Intron Length:
1093

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGATAT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTAATATAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TATTTTTTAATA
Flanking Amino Acid:
KQIKSIDAGPVDAWSLAFSP
Intron Amino Acid Position:
107

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.3
0.83
0.9
79.5
29.4
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
81.8
0.72
0.8
78.4
33.8
Minor 5ss
39.8
-1.1
3.2
53.2
45
Minor BPS
77.2
0.85
1
79.7
29.8

Associated Gene:

Gene:
WDR61
Ensembl Gene ID:
ENSAPLG00000000756
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001018
7789502 - 7796842
7341