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© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_7795957_7796662_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
7795957 - 7796662
Intron Length:
706

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGAAGA
5'SS Class:
strong_major
3'SS Sequence:
TATTCTCTTTTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTATAT
U12 Branch Point Sequence:
TTAACTTTTAGT
Flanking Amino Acid:
QYGILFKQEQAHDDDIWSVA
Intron Amino Acid Position:
14

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.1
0.87
0.8
76.9
33.7
Major BPS
79.2
0.73
1
75.3
39.4
Major PPT
83.6
0.76
0.7
82
29.5
Minor 5ss
27.4
-2.6
2.7
31.6
42.2
Minor BPS
51.4
0.12
2
73.36
43.3

Associated Gene:

Gene:
WDR61
Ensembl Gene ID:
ENSAPLG00000000756
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001018
7789502 - 7796842
7341