About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_7819878_7822642_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7819878 - 7822642
Intron Length:
2765

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAGGAGGA
5'SS Class:
major
3'SS Sequence:
TTCTTACCCGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
GTTTTCTTACCC
Flanking Amino Acid:
EETVDGRKCRSLATWENENK
Intron Amino Acid Position:
84

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.3
0.48
1.1
57
42.6
Major BPS
83
0.82
0.8
82
24.9
Major PPT
79.2
0.66
0.8
74.1
29.8
Minor 5ss
28
-2.5
3.5
29.2
43.4
Minor BPS
70.4
0.62
1.6
78.59
37

Associated Gene:

Gene:
CRABP1
Ensembl Gene ID:
ENSAPLG00000000615
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000000725
7819516 - 7831120
11605