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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_7822757_7831069_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7822757 - 7831069
Intron Length:
8313

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGAACC
5'SS Class:
strong_major
3'SS Sequence:
ATTTCTTTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAT
U12 Branch Point Sequence:
TTCTGATTGATT
Flanking Amino Acid:
RELANDELILTFGADDVVCT
Intron Amino Acid Position:
122

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.8
0.8
0.9
74.3
34.1
Major BPS
91.3
1.03
0.7
79.6
35.6
Major PPT
88.9
0.88
0.7
81.3
35.7
Minor 5ss
34.9
-1.7
2.9
42.4
38.2
Minor BPS
52.2
0.15
2.1
75.85
41.4

Associated Gene:

Gene:
CRABP1
Ensembl Gene ID:
ENSAPLG00000000615
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000000725
7819516 - 7831120
11605