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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_7852650_7853626_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
7852650 - 7853626
Intron Length:
977

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTCAGTGCG
5'SS Class:
major
3'SS Sequence:
TTTTTTTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCGTAT
U12 Branch Point Sequence:
GTATCTGCAACT
Flanking Amino Acid:
MDPARTGSPYQPVIEA
Intron Amino Acid Position:
7

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.1
0.69
1.3
69.7
41.3
Major BPS
66.5
0.41
1.4
65.7
43.2
Major PPT
100
1.12
0.4
100
0
Minor 5ss
28.4
-2.5
2.9
33.2
41.8
Minor BPS
49.9
0.07
2.2
73.89
42.8

Associated Gene:

Gene:
IREB2
Ensembl Gene ID:
ENSAPLG00000016388
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017108
7852631 - 7875367
22737